Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0789040.1a.1b.3a with 2 members (fragile site folic acid type rare fra 10)

Metazoa / Eumetazoa / Bilateria / Protostomia / Ecdysozoa / Nematoda / Chromadorea /

... /

Strongylida / Trichostrongyloidea /

Haemonchus

Completeness score: 1.00

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This HOG has 47 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0789040.1a.1b	138	285	fragile site folic acid type rare fra 10
2	HOG:E0789040.1a.1b.3b	76	96	fragile site folic acid type rare fra 10
3	HOG:E0805436.2a	54	95	Protein fra10ac1
4	HOG:E0789040.1a.1b.3a	29	18	fragile site folic acid type rare fra 10
5	HOG:E0789040.1a.1b.7a	13	14	fragile site folic acid type rare fra 10
6	HOG:E0789040.1a.1b.6a	13	12	fragile site folic acid type rare fra 10
7	HOG:E0824921.1a.2a	8	6	protein Fra10Ac1
8	HOG:E0805436.2a.5b.3c	7	4	Protein fra10ac1
9	HOG:E0789040.1a	6	299	fragile site folic acid type rare fra 10
10	HOG:E0089089	6	8	protein Fra10Ac1
11	HOG:E0805436	5	125	Protein fra10ac1
12	HOG:E0805436.2a.3b.2c	3	2	Protein fra10ac1
13	HOG:E0789040.1a.1b.3b.1a	3	2	fragile site folic acid type rare fra 10
14	HOG:E0824921.1a.2b	2	1	protein Fra10Ac1
15	HOG:E0824921.1a.1c	2	4	protein Fra10Ac1
16	HOG:E0805436.3a.10a	2	1	Protein fra10ac1
17	HOG:E0805436.2a.9b	2	1	Protein fra10ac1
18	HOG:E0805436.2a.7b	2	1	Protein fra10ac1
19	HOG:E0805436.2a.5b	2	7	Protein fra10ac1
20	HOG:E0805436.2a.3b.2a	2	6	Protein fra10ac1
21	HOG:E0789040.1a.1b.5a	2	2	fragile site folic acid type rare fra 10
22	HOG:E0789040	2	302	fragile site folic acid type rare fra 10
23	HOG:E0138397.2b	2	1	Protein FRA10AC1
24	HOG:E0138397.2a	2	1	Protein FRA10AC1
25	HOG:E0138397.1b	2	1	Protein FRA10AC1

Showing 1 to 25 of 47 rows rows per page